[bnferguson]

While I can't speak to all of your favorite packages, vim-mode is most definitely updated for 1.0 (it's very, very actively developed).

If you ever did any development on packages, you may have a development version laying around preempting things. Check in ~/.atom/dev/packages and remove old versions (or git pull them up to the latest dev version).

I had a super old version of tree-view for a long time this way. :)