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by cvsv 4062 days ago
I've seen it used "in the wild" in this publication: "Topographical transcriptome mapping of the mouse medial ganglionic eminence by spatially resolved RNA-seq" http://genomebiology.com/2014/15/10/486/abstract (pdf: http://linnarssonlab.org/pdf/Genome%20Biology%202014.pdf ) to cluster gene expression samples from mouse brain.

I'm working on a project where I'm using similar methods, but not from Ayasdi, to study cyclic phenomena in high-dimensional data.

1 comments

Ok, so here it's used to cluster. There are tons of benchmark clustering datasets. Never seen it used on any of those.