[baldfat]

This is the way I would want my work flow:

1) Use R clean the data

2) Use R to turn the raw data into analytically data

3) Use R to do exploratory charting etc

[Most project stop here]

4) Final Product: RMarkdown (For static reports), Shiny (Interactive variable charts), or now D3 if I want to have interactive charts. My interactive charts would be very few.

I wouldn't want to do the first three steps with javascript.