It should not do that. If it does, there's a bug. Can you tell me what page you're looking at?
EDIT: Oh, you mean the actual text inside the "a" tag? Yes, the plugin will change that in its current form. It would be pretty trivial to not have it do that. I will add that next. In the meantime, I don't think the link itself will be affected -- even now, you should be able to click on it and it will go to the right place.
EDIT: Oh, you mean the actual text inside the "a" tag? Yes, the plugin will change that in its current form. It would be pretty trivial to not have it do that. I will add that next. In the meantime, I don't think the link itself will be affected -- even now, you should be able to click on it and it will go to the right place.