[javert]

> I write all my TeX docs in Markdown and then convert it to TeX

Is there some program that converts Markdown into TeX? Or are you saying that you do this manually?

[gnud]

Pandoc! [1]

[1]: http://johnmacfarlane.net/pandoc/

[ics]

Pandoc handles this pretty well in all the scenarios I've used it in.

[pille]

Pandoc does this well. It's what I use.