This would take some work (more on the server's part than yours), but I think it would be more accurate if you tested the links for 301 redirects and consolidated the results accordingly. For example, in the ASP.NET tag one of my pages has 112 links to an older URL (http://encosia.com/2008/05/29/using-jquery-to-directly-call-...) that 301 redirects to a newer URL (http://encosia.com/using-jquery-to-directly-call-aspnet-ajax...) which has 129 links itself. It would be interesting to see only the latter URL show up in the list with 241 links.
Thanks. Re the redirects, yea I have a lot of work to do on my crawler, my current solution is hand rolled and only has limited capabilities. But if anybody knows of a good open source project let me know, i have been looking at using the common crawl but that's not a complete solution either.