[afshinmeh]

Usually I use JavaScript and Python. I don't have problem with software, I know the correct tools for generating the doc from my code as well. But the problem is that HOW can I integrate it with Github so after each sync/push on the Github repository, document generated automatically from code also?

[globalpanic]

What about generating a wiki from the code documentation, and then uploading that to the Wiki section of your Git repository?

[afshinmeh]

It would be useful also. Do you know any method for doing that?

[globalpanic]

well a quick "goog" brings up this: http://code.google.com/p/doxygen2gwiki/