"As the brain is one connected whole, it is neurologically important that the cortical and thalamic processes remain coordinated."
You have two things you have to prove. One, that it is neurologically important that these processes remain coordinated. Two, that unscientific thoughts somehow cause them to become uncoordinated. I'd settle for any sort of proof that thinking unscientific thoughts has any sort of detectable physiological effect. From there, I'd want to see that the effect is meaningful.
I expect your definition of "logical" is gerrymandered to include certain kinds of illogical thinking of which you approve and ignore others. People engage in superstitious behavior constantly despite it being illogical, even after having the illogicalness of the behavior explained. This doesn't seem to cause them physical harm. Your allegation that people are always being logical seems incoherent in the face of your allegation that holding inconsistency in the mind is detrimental--either we can do it or we can't.
I'm not especially open to continuing the debate. If you have proof of whatever these effects are bring it, but I'm not otherwise interested in continuing a conversation about your weird pseudo-scientific mysticism. I'm happy you found something that works for you, I guess.