Is this a real thing? I don't think I've ever heard "AT protocol" before Bluesky. My first modem was 300 baud, so I wasn't totally out of the loop on this. DDG finds four hits for the phrase before 2020 used to describe the Hayes command set.
Depending on how you search specifically, you may or may not get all of them. For example, if you searched for "at protocol" specifically, you wouldn't get comments that are like "I thought we were talking about the old modem protocol!" and similar.
Anyway I don't think that it means that atproto was misnamed or anything, just that this thread isn't the only time people have brought this up.