Yeah. Worrying about salt in the sea is like worrying about oxygen in the air. Can too much oxygen in the air sometimes be a problem? Yeah, in some corner cases. Is it a major problem that we can't solve? Not at all.
That still doesn't make it a good comparison. The salt emitted by desalination plants is already in the sea now, it's not salt that went somewhere else.
That makes sense to me. At the same time I know the mediterranean sea is heating up more because it cannot move heat out quick enough. I dont know of any mediterranean air, so I believe more closed water zones would behave different than, lets say, the atlantic ocean.