[gilleain]

Hate to agree, but it is true. For a while, I think, the main sequencing framework was in perl (Bioperl). Not sure what was best for structures - possibly Biojava?

It is very tempting, though - 'just' make a nice, clean API in your favourite language (eg Haskell, Ruby, ...) and everyone will flock to use it! Maybe.

[alice-fishr]

Why don't you mention Biopython? Bioperl is already too old and not much up-to-date with newest data.

[flobosg]

He’s talking about the past (“For a while, …”). Up to early 2010s, I would say.