[10000truths]

One of the biggest use cases for fingerprinting is as a way to reject requests from bot traffic, as mentioned in the article. That accept/reject decision should be made as early in the session lifecycle as possible to minimize resource impact and prevent exfiltration of data. You're right that TCP flags don't provide as much signal, as the TCP stack is mostly handled by the OS and middleboxes. A better source of fingerprinting info is in the TLS handshake - it has a lot more configurability, and is strongly correlated with the user agent.