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I won't deny that there are watered down versions of the Thomistic soul that are agnostic with respect to the physicality or super-naturality of things like digestion, but Aquinas himself is quite clear: > The lowest of the operations of the soul is that which is performed by a corporeal organ, and by virtue of a corporeal quality. Yet this transcends the operation of the corporeal nature; because the movements of bodies are caused by an extrinsic principle, while these operations are from an intrinsic principle; for this is common to all the operations of the soul; since every animate thing, in some way, moves itself. Such is the operation of the "vegetative soul"; for digestion, and what follows, is caused instrumentally by the action of heat, as the Philosopher says (De Anima ii, 4). That is to say: we cannot explain things like digestion "naturally" as we would require an "external principle" that does not exist for living things, instead because they "move themselves" they require a super-natural explanation, i.e. the soul. Indeed, Aquinas puts the following as a potential object, which he rebuts > Objection 1: It would seem that the parts of the vegetative soul are not fittingly described—namely, the nutritive, augmentative, and generative. For these are called "natural" forces. But the powers of the soul are above the natural forces. Therefore we should not class the above forces as powers of the soul. > On the contrary, The Philosopher says (De Anima ii, 2,4) that the operations of this soul are "generation, the use of food," and (cf. De Anima iii, 9) "growth." |
Edward Feser's book Aquinas is a good starting point for understanding it.