[abrookewood]

ZFS does this by de-duplicating at the block level, not the file level. It means you can do what you want without needing to keep track of a chain of differences between files. Note that de-duplication on ZFS has had issues in the past, so there is definitely a trade-off. A newer version of de-duplication sounds interesting, but I don't have any experience with it: https://www.truenas.com/docs/references/zfsdeduplication/