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by wombatpm 669 days ago
In grad school (I was in Chemical engineering ) I took molecular biology course. We read/reviewd a number of papers in different areas. For my review I proposed a series of experiments to answer questions raised by the paper. It was very logical and well thought out. Problem was it would have amounted to 3grad students full time for at least a year. Once you see the effort involved you can see why the ML approach is exciting
1 comments

How exactly would ML speed it up something that takes 3 grad students full time?

Listen. A lot of this shit gets discovered for crazy reasons. For two years these two postdocs were throwing away one fraction of their size exclusion chromatography step. I got into a really heated six hour argument where i insisted that the postdocs did not understand that size exclusion chromatography, big shit comes out first (they thought that big shit comes out last). The next day the postdoc apologized, since I was correct.

Oddly, a month or so later, they stopped to take a look at the fraction they were throwing out and it turned out that their molecule was self-assembling into cages. This is important for how the molecule is supposed to work. They got some very important papers out of it. I'm not even thanked.

ML is not accelerate this sort of stuff.

A hypothetical good AI would have reviewed the experimental design and pointed out the misconception
How would the AI know to look there? Trash on ends "void volumes" of chromatography is common.

Anyways what is your training set? Probably upwards of 50% of papers are trash. Will the AI have the intuition to know which ones are good? Does the AI listen at the water cooler to grad students griping about Corey yield?

(It's not on the internet. It's the general sentiment that yields reported by the E.J. Corey lab are inflated).