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by refulgentis 770 days ago
I appreciated this, but it's probably worth mentioning: when you say AlphaFold 3, you're talking about AlphaFold 2.

TFA announces AlphaFold 3.

Post: "Unlike AlphaFold 3, which predicts only a small, preselected subset of ligands, RosettaFold All Atom predicts a much wider range of small molecules"

TFA: "AlphaFold 3...*models large biomolecules such as proteins, DNA and RNA*, as well as small molecules, also known as ligands"

Post: "they also use the structure predicting model as the denoising model in a diffusion process...Presumably, DeepMind is working on this problem as well."

TFA: "AlphaFold 3 assembles its predictions using a diffusion network, akin to those found in AI image generators."