[mikk14]

I'd give it a shot to make node embeddings with Node2Vec [1] and then reduce them to 2D with UMAP [2]. I think it could help breaking apart the hairball, assuming you have a nice clustered structure.

[1] https://pytorch-geometric.readthedocs.io/en/latest/generated... [2] https://umap-learn.readthedocs.io/en/latest/