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To answer your questions:

I never manage my reading. Plex manages my watching/listening. I almost never summarize things that I find online and almost never refer back to those summaries. I use a notebook to store knowledge. The most challenging part of managing the notebook is that it takes up limited desk space.

Speaking candidly:

I've tried a number of systems such a Dendron, Joplin, Obsidian, etc. and nothing feels as good as pen and paper. In theory you'd think these systems are fantastic but I've come to the conclusion that taking notes is more than the raw information taken down. With a notebook I feel like I have a mental map in my head of the geography of the notebook, the places different information is stored, how the notebook feels. It's also low friction. At any time I can touch a pen to paper and nothing can stop me.