[Helmut10001]

I use a combination of Zotero, Locally Linked PDFs/Folder Structure, and SumatraPDFs (Comments etc.):

    folders:
        - for every literature search, create a folder with date and name
            - e.g. 2024-03-21_Quantum_Entanglement
            - use CTRL-SHIFT-DRAG to drop files into Zotero as Links, see [#77](https://github.com/zotero/zotero/issues/77)
            - You _can_ organize in Zotero, but you don't have to. Files can be linked
            to multiple Zotero folders (simply copy library entries in Zotero)
            - sync literature folder and zotero database with nextcloud to somewhere, for backup
    zotero:
        - disable sync
        - set “Base directory” (Preferences > Advanced > Files and Folders) to local literature folder
        - set PDF View to “System default” (Preferences > General > “Open PDFs using..”)
        - Enable recursive quick search in folders: go to Preferences > Advanced > Config Editor, search for `recursiveCollections`, double click (set to True)
        - use CTRL-Shift-C to copy bibliography to clipboard
        - Dark Theme:
            - https://github.com/Rosmaninho/Zotero-Dark-Theme
            - Go to `%AppData%\Zotero\Zotero\Profiles\` (`XXXXXXXX.default`)
            - Create `chrome` folder
            - Place the `userChrome.css`
            - Start Zotero
        - Add-Ons:
            - zotero-pdfkit
                - https://github.com/sharpevo/zotero-pdfkit/
                - allows to modify/select a “default” PDF attachment to be opened
            - ZoteroDuplicatesMerger
                - https://github.com/frangoud/ZoteroDuplicatesMerger
                - easier merging of duplicates
            - zotero-folder-import
                - https://github.com/retorquere/zotero-folder-import
                - bulk import PDFs from a folder
            - zotero-tag
                - https://github.com/windingwind/zotero-tag
                - allows to add stars to items (Num Key `1`, `2`, `3` etc.)
    - PDF Tools:
        - qpdf
            - removing passwords, unlocking PDFs, conversion
            - install in WSL with `apt-get install qpdf`
            - remove password with `qpdf --decrypt --password="" input.pdf output.pdf`
        - `SumatraPDF`
            - _Really_ fast Viewing of PDFs and adding annotations (highlight, comment etc.)
            - Highlight Text: `A`, Save to file: `CTRL+SHIFT+S`
            - it is much faster than Adobe Acrobat
        - [pdfplumber](https://github.com/jsvine/pdfplumber)
            - Awesome python package to extract tables from PDFs into data pipelines. Use with Jupyter Lab.
        - [PDF X-Change viewer](https://www.tracker-software.com/product/pdf-xchange-editor), `choco install pdfxchangeviewer`
            - for manual OCR of pages/PDFs

[gerroo]

Do you know if there's a way to write latex comments in Zotero / Mendeley? It's something I've been looking for.

[Helmut10001]

Did you check the `zotero-better-notes`? [1]

> LaTex math in Zotero note is no longer a dream. The `zotero-better-notes` addon now supports this feature!

[1]: https://github.com/windingwind/zotero-better-notes

[gerroo]

Thanks for that :)