[stared]

There is a saying that "physics is a subset of reality that can be approximated by coupled harmonic oscillators".

If they are purely linear - it is simple; just write a matrix of their spring coefficients and diagonalize it. If there are non-linear terms, well, then it isn't. This is the case in one of the Quantum Field Theory (and its instance, the Standard Model), the most fundamental theory describing particles. One of the takes on Feynman diagrams is that it is a series approximation of non-linear interactions in the QFT.