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by sterlind 981 days ago
the SARS-CoV-2 genome is ~29.8K nucleotides long. 96% of that sequence is identical to the genome of RaTG13, i.e. all but ~1200 match. for reference, SARS-CoV-1 is only 82% similar to SARS-CoV-2. at a mutation rate of 8*10^-4, this means the current strains of COVID are ~97% identical to the original 2019 sequence.

so, darned close honestly. to be clear, I'm not saying RaTG13 is the source of the lab leak - it's just too different - but I am saying that it's much closer than the original SARS, and thus had no business being analyzed in a BSL-2 lab.

2 comments

I don't see how then % number means anything. Humans and apes have 4% difference. It depends on thebkind of difference, not the number of different genes
Sophisticated evolutionary models are needed to accurately estimated expected mean and variance in genetic distances. For example, rare events of large effect (e.g. recombination) also introduces variation beyond within-strain mutation.