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by nonrepeating
1039 days ago
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The closest I’ve gotten to local debugging is having the Python scripts that are launched by NextFlow steps connect to a remote debugger process (“remote” but running on the same workstation). PyCharm makes this fairly painless to orchestrate. I’ve never been able to debug thr Groovy script in a Nextflow pipeline itself; I think you’d need a debug build of the nextflow executable for that. |
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