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by zinclozenge 1067 days ago
Would be great to also add the ability to calculate the tanimoto coefficient for cheminformatics purposes.
2 comments

Would love to work with you on that! Please dm to https://twitter.com/neondatabase
Can you say more about the use case?
Yea, I mean basically there are a variety of techniques for encoding molecules as vectors. Morgan/circular fingerprints (cf https://darkomedin-datascience.medium.com/data-science-for-d... as a quick google search) are one way of encoding to bit vectors, and the Tanimoto similarity is a well validated measure of similarity (because of the bit vectors, cf https://en.wikipedia.org/wiki/Chemical_similarity).

Virtual screens of molecules frequently use steps to filter out molecules, one of which is via chemical similarity.

Can our team reach out? please email nikita@neon.tech and we will help you out.