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by benjamin-lee 1224 days ago
This looks excellent for my use case, which is visualizing viroid and viroid-like circular genomes. Right now, I reluctantly use the R version but am eager to try this out. I spent countless hours making this figure [1] for my last paper and am quite confident that would have saved me a ton of time.

If you get a chance, please do publish this package in something like the Journal of Open Source Software so that I can cite it. Thanks for sharing this tool!

[1] https://www.cell.com/cell/fulltext/S0092-8674(22)01582-3#gr4

2 comments

As you mentioned, pyCirclize can easily plot a circular genome map like the one in that paper.

> If you get a chance, please do publish this package in something like the Journal of Open Source Software so that I can cite it.

I will consider it.

Which R equivalent for circular plots did you use?
From the citation, it looks like circlize was used.

https://github.com/jokergoo/circlize