You're assuming that the breach was done through the UI and not for example an oauth token or ssh key that was stolen from a developer's machine and used to download the source code by the attacker.
Another comment mentions GitHub themselves detecting the breach - in this case it's unlikely to be done via a compromised developer's laptop as the access would otherwise look normal and wouldn't trigger GH's security alerts.
Meh... I do this every 6-8 months as a principal engineer. I've had many legit use cases.: Understanding our overall dependency tree, validating code coverage assumptions, seeing which projects built still, testing out prototype profiler reports, inspecting the code to see how hard adding x pattern would be, quantifying code change patterns over the pandemic, seeing which uses of the AWS sdk or internal clients were instrumented with metrics, seeing what pct would build under make/go build/bazel/etc.
Anyway many legit reasons. Should it set off an alarm? Probably. Can you say before you do it? For sure!