A major part of diesel efficiency comes from a lack of a throttle plate. I’d be surprised if adding one was beneficial for emissions. Do you have any reference here? I couldn’t find one with a quick googling.
I don't know if it's for emissions reasons, and I doubt it does anything for emissions, but Volkswagen diesels have a throttle that's there to make engine shutoff much less shaky. It's called the anti-shudder valve, and it activates every time the engine is stopped, and it would stop a runaway diesel.
I'd guess too-lean combustion in idle is bad, and throttling the intake so that it starts out with reduced pressure and at the fixed compression ratio, won't reach as-high pressures (which waste power by some of the adiabatic heating coupling to the cylinder walls).
Might only work on individual cylinders, as it seems like it'd easily prevent ignition, but still...
what the heck are you talking about, if you're at partial throttle, by design a normal diesel has no control over how much air is entering the engine, so your only way of modulating torque is changing the injection. This means your air fuel ratio will be uncontrolled, which is bad for emissions.