His Turing award citation: "Professor Wilkes is best known as the builder and designer of the EDSAC, the first computer with an internally stored program."
I think Wilkes got his award for his software contributions despite being well known for his hardware efforts.
The 2009 award to Chuck Thacker, on the other hand, was clearly based on his contributions to hardware. I have the impression that ACM had a change in policy around that time.
His Turing award citation: "Professor Wilkes is best known as the builder and designer of the EDSAC, the first computer with an internally stored program."