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I don't think this article gives the pro-"Junk DNA" arguments fair treatment.

Check out Larry Moran's blog [1, 2] if you want to to hear the other side of the story. He maintains that most of the human genome IS junk, and I find his arguments compelling.

[1] A representative article: https://sandwalk.blogspot.com/2013/07/five-things-you-should...

[2] Rabbit hole warning, all of his Junk DNA posts: https://sandwalk.blogspot.com/2008/02/theme-genomes-junk-dna...