It wasn't really changed for 3D All Stars, rather they based 3D All Stars on the 1997 Japan-exclusive re-release which never had that line to begin with.
That version added rumble support and fixed some bugs, but being intended for Japan where Bowser is called King Koopa they used a different voice line.
That version added rumble support and fixed some bugs, but being intended for Japan where Bowser is called King Koopa they used a different voice line.