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The state can change the bylaws. Or at least make the bylaws unenforceable within state boundaries, which has the same effect. I believe that is what California has done here.

For another example, suppose there were some chemical company organization that had a bylaw like, "You cannot print information about carcinogenic ingredients in your products." But then California passes prop 65. The bylaws are now moot -- if you have to choose whether to comply with bylaws or state law, you either have to take your ball and go home, or the bylaws have to change.