[dragonwriter]

> but that means he could have arbitrarily results.

Well, he could have, if he understood the simulation well enough; even in the overt simulation, which he was coached on, he had more constrained apparent ability. He clearly goes through an awakening over a period about the nature of the “real” world and his ability within it, that in some way parallels (without the coaching) his earlier awakening to the Matrix, but at it's most advanced point (as far as his externalized use of abilities, at least) it is still obviously less complete than the point he reaches with the Matrix at the end of the first movie.

> But, you see this stuff much earlier, take ‘residual self image’ and consider what that’s supposed to mean

That everything the humans “know” about the Matrix is curated material that is part of the system of control revealed later in the series, and is often misleading, and frequently incoherent under careful examination, which is discouraged by the quasi-religious framework of belief that is itself part of the system of control.

[Retric]

I am more referring to how it fits in with the story. What humans know about the Matrix is treated like what Hogwarts professors know about magic vs what starfleet academy knows about warp cores.

The fact that people jacking in can die is not treated as an open technical problem to be solved, but gamps rules of transformation. Warp cores are not nessisarily fully understood, but they are actively trying to test out and improve them. In the Matrix they don’t treat things as a theory they just notice stuff and slap a name on it. At the same time they built a loading program to bring guns into the system. Which is why I am saying it’s even a close call between science fiction and fantasy.