Full quote: "Mason's team was able to identify specific plastics over 100 microns (0.10 mm) in size but not smaller particles. According to experts contacted by CBC News, there is a chance the Nile Red dye is adhering to another unknown substance other than plastic."
Key point: they're unsure about the smaller particles, but they're sure about the bigger ones. There is microplastics in the samples.
That's not too surprising, given that this problem of consuming plastics is a relatively new one. There likely hasn't been enough time to fully understand the implications of eating tiny plastic particles. I doubt that they are all expelled from your body with other wastes given that this isn't something your body naturally deals with. More research is needed.
Key point: they're unsure about the smaller particles, but they're sure about the bigger ones. There is microplastics in the samples.