If it rejected 99.9% of patents, the expected value of the typical application drops to 1/1000 its current value. So fewer people would pay the application fee.
Fewer patent clerks would be needed, so their operating costs would also decrease. But presumably not below 1/1000.
If it gets a reputation for being stricter on granting patents, a lot of people won't waste their time or money in submissions that are likely to be rejected.
Fewer patent clerks would be needed, so their operating costs would also decrease. But presumably not below 1/1000.