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by epistasis
3084 days ago
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Shorter and less accurate than the Wikipedia page: A SNP is a single nucleotide polymorphism, a single letter variation in a genome. This study measured about half a million SNPs for each person. A statistical test is then performed to see how well each SNP site predicts the trait, generating a p-value. If a single such test were being performed, then typical "significant" p-value levels would be 0.05 or 0.01 or 0.001, these are arbitrary but generally accepted. For data from SNPs unassocisted with the trait, p-values come randomly and uniformlay from the range 0 to 1. So with a hundred SNPs unassocisted with the trait, a person would expect about one p-value at <= 0.01. There are many ways to correct for these multiple hypothesis tests. For GWAS, the generally accepted significance levels are 5e-8, which under the rubric of the fancily named but simple Bonferroni correction, would be equivalent to a 0.01 to 0.05 p-value from a single test. These two reported SNPs, when correcting for multiple testing, don't meet the standard definition of significant. |
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