There actually isn't any database outside of a directory of files. The version control is done the same way that Git works under the hood but written from scratch in C.
Essentially, we have a database directory with two sub-directories, refs and objects. In refs we have a file for the id of each piece of data stored. The id file contains the hash of the latest commit for this id. A commit is just another file that contains a time, a hash of the previous commit, and the hash of the data.
The objects directory stores all the data and the commits, with each entry's filename being the hash of its data and its contents as the data stored.
So all we're doing is making a linked list where each entry points to a different version of that data. No external database or version control needed.