After spending 8 months wading through the MFI program myself, I concur that it's messy and poorly managed - I'm not surprised that this is part of the reason for the delay. Keep at it, I look forward to mine!
Hey thank for the encouragement! IMO the authentication chip has some details that are very poorly documented (and as a result gave me months of headaches). if you want to talk shop anytime please feel free to drop me a line at: craig <at> wakemate <dot> com. would love to have another hardware developer working on apple auth to chat with...