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by ancaster 3276 days ago
Ditto. We developed a nice set of high-res hippocampal atlases[1] and multi-atlas segmentation method to use them[2] and compared it with FSL, and freesurfer and found FSL and freesurfer would often over-estimate segmentations. Good for a first pass because they are both dead-easy to run though.

[1] http://cobralab.ca/atlases/

[2] https://www.ncbi.nlm.nih.gov/pubmed/24784800

code here: http://cobralab.ca/software/MAGeTbrain/

1 comments

You and your lab do great work. You have my upvote and recommendation, fellow subfielder.