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by cing
3293 days ago
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The traditional structural classifications just have very low information content in the context of protein dynamics. Coil especially. You've given the example of a disordered region interconverting on different timescales, but these timescales can, purportedly, be predicted from chemical shift data, etc. [1], so why not call it "fast coil" or "slow coil"? It's not only about timescales either, because you may need to do extra experiments for that data. It's about finding the highest information content descriptors for an amino acid and using machine learning to do it. Your descriptors (jello, velcro, balloons) are actually much better at conveying dynamics than the static descriptors used in structural biology. [1] http://pubs.acs.org/doi/abs/10.1021/ct501085y |
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