Here is my blog post from more than 2 years ago regarding the status of the Arduino Yùn:
http://www.wifi4things.com/arduino-yun-what-is-under-the-hoo...
And here is my clarification request on the Arduino forum, which is still unanswered:
http://forum.arduino.cc/index.php?topic=187766.0
So, this actually is an exception to Betteridge's law; the answer to the question is "yes, arduino is no longer open source".