[opejn]

> Not to mention the fact that Homebrew itself uses the system git to install itself.

To me, this is the biggest problem, and it's not just Homebrew. Any source package manager that uses Git will potentially have this problem. With a vulnerable Git on your system, you have to second-guess every build script you ever run that might make use of Git, to make sure it obeys the path you set instead of choosing its own.