[omouse]

Right and now think about who is going to control the JIRA install: the manager or VP or CTO.

Fogbugz's interface prevents this kind of crazy customization and thus it acts as a defense against the craziness. For a custom workflow with Fogbugz you have to grab a plugin. To get my manager to install a plugin for JIRA took weeks (and I still never got access to the REST API or approval for one plugin months later). So Fogbugz is developer-friendly because it makes it harder for a manager to go in an lock things down and mess around. With JIRA, the micromanager seems to be bundled with JIRA... ;-)

[tom9729]

Managers find a way. They will just use (or invent) another tool that lets them do it how they want. Now you have two tools, and some poor schmuck (or the developers) will get stuck with the job of keeping them in sync.